Database Type |
Description |
URL |
DNA and Protein Sequence Databases |
SRS |
SRS Browser for 38 databanks in molecular biology
|
http://www.embl-heidelberg.de/srs5/
|
SWISS-PROT and TrEMBL |
Annotated protein sequence database (78,082 and
178,957 sequences, respectively) |
http://expasy.hcuge.ch/sprot/sprot-top.html |
PIR |
Protein Information Resource (116,372 sequences)
|
http://www-nbrf.georgetown.edu/pir/ |
EMBL |
Nucleotide Sequence DNA sequence database (3,046,471
Database sequences) |
http://www.ebi.ac.uk/ebi_docs/embl_db/
ebi/topembl.html |
GenBank |
DNA sequence database (3,044,000 sequences) |
http://www.ncbi.nlm.nih.gov/Entrez/
nucleotide.html |
DDBJ |
DNA Data Bank of Japan (3,073,166 sequences) |
http://www.ddbj.nig.ac.jp/ |
Genomics |
Pedant at MIPS |
Software system for completely automatic and exhaustive
analysis of protein sequence sets (21 complete, 21 unfinished
genomes) |
http://pedant.mips.biochem.mpg.de/
|
TIGR Database |
Microbial database (20 published genomes, 60 genomes
in progress) |
http://www.tigr.org/tdb/tdb.html |
Sanger Center |
Human genome and 24 more genomes |
http://www.sanger.ac.uk/ |
Protein Structure |
PDB |
Archive of experimentally determined three-dimensional
structures (9,179 entries) |
http://www.pdb.bnl.gov/ |
Literature Searches |
Medline |
Search for citations |
http://www4.ncbi.nlm.nih.
gov/PubMed/ |
SWISS-PROT |
journals list List of online journals |
http://www.expasy.ch/cgi-bin/
jourlist?jourlist.txt |
Homology Searches |
BLAST |
Sequence similarity search in 22 sequence
databases and 42 genomes |
http://www.ncbi.nlm.nih.gov/BLAST/ |
FASTA |
Sequence similarity search in 25 sequence databases |
http://www2.ebi.ac.uk/fasta3/ |
Structure Prediction |
Swiss-Model |
Homology modeling |
http://expasy.hcuge.ch/swissmod/SWISS-MODEL.html |
Biotech Validation Suite for Protein
Structures |
Quality checks of protein structures
|
http://biotech.embl-heidelberg.de:8400/ |
PredictProtein |
Prediction of aspects of protein structure |
http://www.embl-heidelberg.de/predictprotein/
predictprotein.html |
Protein Architectures |
SCOP |
Protein structure classification |
http://scop.mrc-lmb.cam.ac.uk/scop/ |
CATH |
Protein structure classification |
http://www.biochem.ucl.ac.uk/bsm/cath/ |
International Organizations |
FAO |
Partnership programs of FAO |
http://www.fao.org/GENINFO/partner/
default.htm |
UNESCO |
Biotechnology fellowship programs of
UNESCO |
http://www.unesco.org/general/
eng/programmes/science/life/index.htm |